Publications
============
Ison, J. et al. (2019). `The bio.tools registry of software tools and data resources for the life sciences <https://doi.org/10.1186/s13059-019-1772-6>`_. Genome Biology, doi:`10.1186/s13059-019-1772-6 <https://doi.org/10.1186/s13059-019-1772-6>`_

Ison, J. et al. (2019). `Community curation of bioinformatics software and data resources <https://doi.org/10.1093/bib/bbz075>`_. Briefings in Bioinformatics. doi:`10.1093/bib/bbz075 <https://doi.org/10.1093/bib/bbz075>`_

Tsiamis, V. et al. (2019) `A Thousand and One Software for Proteomics: Tales of the Toolmakers of Science <https://doi.org/10.1021/acs.jproteome.9b00219>`_. Journal of Proteome Research. doi:`10.1021/acs.jproteome.9b00219 <https://doi.org/10.1021/acs.jproteome.9b00219>`_

Palmblad, M., Lamprecht, A-L, Ison, J. and Schwammle, V. (2018) `Automated workflow composition in mass spectrometry based proteomics <https://doi.org/10.1093/bioinformatics/bty646>`_  *Bioinformatics* doi:`10.1093/bioinformatics/bty646 <https://doi.org/10.1093/bioinformatics/bty646>`_

Hillion K.H., Kuzmin I., Khodak A., Rasche E., Crusoe M., Peterson H., Ison J., Ménager, H.  (2017). `Using bio.tools to generate and annotate workbench tool descriptions <https://f1000research.com/articles/6-2074/v1>`_  *F1000Research* (article).
doi:`10.12688/f1000research.12974.1 <https://doi.org/10.12688/f1000research.12974.1>`_

Doppelt-Azeroual, O., Mareuil, F., Deveaud, Kalaš, M., Soranzo, N., van den Beek, M., Grüning, B., Ison, J. and Ménager, H. (2017).  `ReGaTE: Registration of Galaxy Tools in Elixir <https://doi.org/10.1093/gigascience/gix022>`_  *GigaScience*,  doi:`10.1093/gigascience/gix022 <https://doi.org/10.1093/gigascience/gix022>`_

Ménager, H., Kalaš, M., Rapacki, K. and Ison, J. (2016).  `Using registries to integrate bioinformatics tools and services into workbench environments <https://link.springer.com/article/10.1007/s10009-015-0392-z>`_  *Int J Softw Tools Technol Transfer*,  doi:`10.1007/s10009-015-0392-z <https://doi.org/10.1007/s10009-015-0392-z>`_

Ison, J. et al. (2015). `Tools and data services registry: a community effort to document bioinformatics resources. <http://nar.oxfordjournals.org/content/early/2015/11/03/nar.gkv1116.long>`_ *Nucleic Acids Research*,  doi: `10.1093/nar/gkv1116 <https://doi.org/10.1093/nar/gkv1116>`_ 

Ison, J., Kalaš, M., Jonassen, I., Bolser, D., Uludag, M., McWilliam, H., Malone, J., Lopez, R., Pettifer, S. and Rice, P. (2013). `EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats <http://bioinformatics.oxfordjournals.org/content/29/10/1325.full>`_ *Bioinformatics*, doi: `10.1093/bioinformatics/btt113 <https://doi.org/10.1093/bioinformatics/btt113>`_ 

Citation
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If you use bio.tools, please cite:

Ison, J. et al. (2015). `Tools and data services registry: a community effort to document bioinformatics resources. <http://nar.oxfordjournals.org/content/early/2015/11/03/nar.gkv1116.long>`_ *Nucleic Acids Research.*  doi: `10.1093/nar/gkv1116 <https://doi.org/10.1093/nar/gkv1116>`_ 

If you use EDAM or its part, please cite:

Ison, J., Kalaš, M., Jonassen, I., Bolser, D., Uludag, M., McWilliam, H., Malone, J., Lopez, R., Pettifer, S. and Rice, P. (2013). `EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats <http://bioinformatics.oxfordjournals.org/content/29/10/1325.full>`_ *Bioinformatics*, doi: `10.1093/bioinformatics/btt113 <https://doi.org/10.1093/bioinformatics/btt113>`_