Publications

Workbench integration

Hillion KH, Ison J and Ménager H. (2017). ToolDog – generating tool descriptors from the ELIXIR tool registry [version 1; not peer reviewed]. F1000Research 2017, 6:767 (poster). doi:10.7490/f1000research.1114125.1

Doppelt-Azeroual, O., Mareuil, F., Deveaud, Kalaš, M., Soranzo, N., van den Beek, M., Grüning, B., Ison, J. and Ménager, H. (2017). ReGaTE: Registration of Galaxy Tools in Elixir GigaScience, doi:10.1093/gigascience/gix022

Ménager, H., Kalaš, M., Rapacki, K. and Ison, J. (2016). Using registries to integrate bioinformatics tools and services into workbench environments Int J Softw Tools Technol Transfer, doi:10.1007/s10009-015-0392-z

Ison, J. et al. (2015). Tools and data services registry: a community effort to document bioinformatics resources. Nucleic Acids Research, doi: 10.1093/nar/gkv1116

Ison, J., Kalaš, M., Jonassen, I., Bolser, D., Uludag, M., McWilliam, H., Malone, J., Lopez, R., Pettifer, S. and Rice, P. (2013). EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats Bioinformatics, doi: 10.1093/bioinformatics/btt113

Citation

If you use bio.tools, please cite:

Ison, J. et al. (2015). Tools and data services registry: a community effort to document bioinformatics resources. Nucleic Acids Research. doi: 10.1093/nar/gkv1116

If you use EDAM or its part, please cite:

Ison, J., Kalaš, M., Jonassen, I., Bolser, D., Uludag, M., McWilliam, H., Malone, J., Lopez, R., Pettifer, S. and Rice, P. (2013). EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats Bioinformatics, doi: 10.1093/bioinformatics/btt113