We organise many events as well as attend events organised by others. If you want to attend an event or have an idea for an event, please mail firstname.lastname@example.org. As a rule we try to avoid events in July & August. All attendees should please read our code of conduct.
- Curation Hackathons (“curatathons”) gather providers from across the board to curate their resources, critique the Registry interfaces, and provide a forum for knowledge exchange and collaboration.
- Thematic Hackathons engage experts in a specific scientific area to help improve the relevant branches of EDAM, consolidate the existing registry annotations, as well as register new resources within the theme.
- Resource Hackathons collaborate with experts from a specific collection of tools and services, typically some other registry, community project or Web portal, to bring the collection up to the ELIXIR annotation standard and expose it in the Registry.
- Technical Hackathons focus on ontology, software or other technical developments in support of curation of the Registry, its technical development, applications and integration with other systems.
Technical Hackathon : Towards a comprehensive catalogue of data formats (Autumn 2017 tbd, Amsterdam, NL) tentative
A hackathon aimed at providing comprehensive coverage of data formats in EDAM. More details will be added soon.
ELIXIR-DK / bio.tools Open Day (Aug 23 2017, Odense, DK)
An informal day of presentations, discussion and hacking around activities of the Danish ELIXIR node, including presentations about the ELIXIR Tools and Data Services Registry (https://bio.tools), bio.tools content and feature development, the EDAM ontology, applications of the registry, future plans and more.
Technical Hackathon : Visual Workflows in bio.tools (Mar 1-3 2017, Tallin, EE)
A three day workshop organised by ELIXIR-EE and partners aiming to implement a proof-of-principle for “visual worfklows” in bio.tools : navigation of bio.tools content with cross-links to TeSS via diagrams for common analytical workflows.
Workshop: The future of proteomics in ELIXIR (Mar 1-2 2017, Tübingen, DE)
Focussed on creating a white paper to discuss the common infrastructures and services needed by the European proteomics community. bio.tools and EDAM were discussed.
Workshop: ELIXIR discovery portals (ELIXIR Innovation and SME Forum: Genomics and Health - Global resources for local Innovation, Feb 27-28 2017, Helsinki, FI)
The forum was aimed at the companies that use public bioinformatics resources in their business and would like to further streamline this process. The event was jointly organized by ELIXIR Finland, ELIXIR Estonia and the ELIXIR Hub. bio.tools was presented.
Workshop: bio.tools & EDAM @ 2nd NEUBIAS taggathon (Feb 13-15 2016, Oeiras near Lisbon, PT)
The 2nd NEUBIAS Taggathon hosted and supported by the Gulbenkian Institute of Science, organized by the working group “Webtool” (WG4) of NEUBIAS, and in conjunction with the NEUBIAS training school and the following NEUBIAS conference. We extended the bioimaging sub-domain of EDAM in team work with bioimaging experts, and coordinated the development of biii.info/BISE with bio.tools.
Curatathon : Genomics tools in crop & animal breeding (Feb 2-3 2017, Aarhus, DK)
A curation hackathon aimed at curating software tools used for crop and animal breeding research.
Workshop : bio.tools @ Debian Med Sprint (Jan 12-16 2017, Bucharest, RO)
bio.tools folk join the Debian Med folk for co-hacking and co-learning. We improved EDAM annotations in Debian Med, and progressed towards importing high-quality software information from Debian (Med) to bio.tools.
Thematic Hackathon : Computational Proteomics Resources (Jan 10-13, 2017, Semmering, AT)
A thematic hackathon aimed at curating tools for computational proteomics, co-located with the Computational Proteomics Conference.
Technical Hackathon : bio.tools @ NETTAB : (Oct 24 2016, Rome, IT)
A one day bioinformatics hackathon organized by ELIXIR held in occasion of the NETTAB 2016 Workshop. The hackathon will include the following two main strands: 1) Biosoftware description using bio.tools and schema.org. 2) Deployment of bioinformatics tools and services through Docker.
Workshop: bio.tools & EDAM @ 1st NEUBIAS taggathon (Sep 14-16 2016, Barcelona, ES)
The 1st NEUBIAS Taggathon hosted and supported by Universitat Pompeu Fabra, organized by the working group “Webtool” (WG4) of NEUBIAS, and in conjunction with the NEUBIAS training school. The aim was to bring-in pre-incubated ideas and elements of the next biii.info/BISE webtool and to progress with its implementation. The presence of bio.tools and EDAM projects ensured coordination of NEUBIAS and EuroBioimaging registry and ontology developments with ELIXIR.
Conference: ELIXIR-DK @ ECCB (Sep 3-7 2016, The Hague, NL)
ELIXIR-DK will have a booth at ECCB and will showcase the work of the Danish ELIXIR node including the ELIXIR Tools & Data Services Registry (dev.bio.tools) and the EDAM ontology.
Conference: ELIXIR-DK @ 2nd Annual Danish Bioinformatics Conference (Aug 25-26 2016, Odense, DK)
ELIXIR-DK will have a booth at DKBC and will showcase the work of the Danish ELIXIR node including the ELIXIR Tools & Data Services Registry (dev.bio.tools) and the EDAM ontology.
Workshop : ELIXIR-DK / bio.tools Open Day (Aug 24 2016, Syddansk Universitet, DK)
An informal day of presentations, discussion and hacking, combining two events in one: 1) ELIXIR-DK staff technical get-together and 2) bio.tools workshop.
Conference: ELIXIR-DK @ IMSB 2016 (Jul 8-12 2016, Orlando, USA)
ELIXIR-DK will have a booth at IMSB 2016 and will showcase the work of the Danish ELIXIR node including the ELIXIR Tools & Data Services Registry (dev.bio.tools) and the EDAM ontology.
Technical Hackathon : Tools, Workflows and Workbenches (May 18-20, 2016, Institut Pasteur, Paris, FR)
A hackathon bringing together developers from key technical projects from ELIXIR and beyond including: the ELIXIR Tools & Data Services Registry (bio.tools), workbench/workflow projects (CWL, Galaxy, Taverna, Arvados), bioinformatics container solutions and registries, and the EDAM ontology.
Resource Hackathon : ELIXIR-SI Tools & Data Services (Apr 8, 2016, University of Ljubljana, SI)
ELIXIR-SI Registry Hackathon will take place on Apr 8, 2016 12-18h at the Faculty of Computer and Information Science (room PR05). The aim of the hackathon is to register Slovenian Bioinformatics Resources and create a national catalogue of Bioinformatics Tools and Data Services.
Thematic Hackathon : Metagenomics Training Resources (Apr 7-8, 2016, EMBL-EBI, UK)
Organised in collaboration with the GOBLET and the ELIXIR Training Platform.
Resource Hackathon : French Tools & Data Services (Mar 24-25, 2016, Gif-sur-Yvette, FR)
A hackathon bringing together representatives of French bioinformatics communities with the ELIXIR Tools & Data Services Registry, dedicated to the description and cataloguing of French tools and services, to boost their discovery and utility.
Resource Hackathon : Norwegian Tools & Data Services (Mar 16-18, 2016, NTNU Trondheim, NO)
A hackathon bringing together representatives of Norwegian bioinformatics communities with the ELIXIR Tools & Data Services Registry, dedicated to the description and cataloguing of Norway tools and services, to boost their discovery and utility.
Resource Hackathon : bio.tools @ Debian Med Sprint (Feb 4-7 2016, Lyngby, DK)
A resource hackathon focussed on curation and software development towards annotation and registration of tool packages from Debian Med. Annotation of Debian Med packages with EDAM.
Resource Hackathon : EMBL EBI tools (Jan 27-28 2016, EMBL EBI, UK)
A mini-hackathon aimed at curation of EMBL EBI software tools.
Resource Hackathon : de.NBI EDAM Codefest (Jan 19-20 2016, Freiburg Uni., DE)
This hackathon, organised by University of Freiburg, will focus on 1) annotation of de.NBI tools and services, 2) ELIXIR Registry and registration process and 3) Publishing tools in the ELIXIR Registry.
Technical Hackathon : EDAM development heuristics (Dec 1-4 2015, Amsterdam, NL)
This hackathon aimed at preparing EDAM for scaling with registry growth. The focus was to enumerate EDAM development heuristics to ensure usability, identify desirable clean-ups, and to devise quality assurance methods, including usability benchmarking in different scenarios. It also included a thematic session focussing on protein structural biology and the WHAT-IF package.
Curatathon : bio.tools curation (Nov 4-6 2015, Brno, CZ)
The second in the series, will aim for representation in the registry of all ELIXIR nodes, including new partners from Spain, Netherlands, Sweden and Finland, and other key resources beyond ELIXIR.
Thematic Hackathon : RNA analysis (Sep 23-25 2015, Copenhagen, DK).
A thematic hackathon focussed on RNA analysis and seeking to establish an ELIXIR RNA Tools Consortium that the Registry can draw upon in the future.
Thematic Hackathon : defining good practice for resource annotation and registry curation (Aug 23-25 2015, Tallin, EE).
A three day workshop organised and financed by ELIXIR-EE aiming to identify relevant processes and good practice for the annotation and curation of resources for their integration into the emerging ELIXIR infrastructure, focussed on next generation sequencing (NGS) analysis and the SeqWIKI Resource Hub.
Technical Hackathon - EDAM Development & Governance (Mar 11-13 2015, Lyngby, DK)
Focused on EDAM technical maintenance and usability, and produced a mock-up of tooling to assure optimal usage of EDAM for registry curation.
Curatathon - Registration of Tool & Data Services (Nov 19-21 2014, Lyngby, DK)
Gathered representatives of institutes and key projects within ELIXIR and beyond. The participants performed a valuable pre-release critique of the Registry mechanism and interfaces, and added more than 300 resources to the content.
Mobyle, EDAM and Service Registry hackathon (Jun 17-18 2014, Paris, FR)
Workshop - ELIXIR, BioMedBridges & RDA Workshop: A common vocabulary to classify resources in the life sciences (Oct 7-8 2014, Brussels, NL)
ALLBIO Workshop - Metagenomics & interoperability (Apr 10-12 2014, Amsterdam, NL)
BioMedBridges AGM Tools Workshop (Mar 9-12 2014, Florence, IT)
bio.tools @ Debian Med Sprint (Jan 31-Feb 3 2014, Aberdeen, UK)
ELIXIR/BioMedBridges Workshop on Tool Registries (Oct 16-18 2013, CBS-DTU, DK)
BioMedBridges Registry Workshop (May 8 2013, Imperial College, UK)
AllBio / EMBRACE Continuity Workshop (Mar 18-20 2013, Amsterdam, NL)
BioMedBridges AGM Registry Workshop (Mar 11-12 2013, Dusseldorf, DE)
EDAM hackathon (Oct 9-13 2012, EMBL-EBI, UK)
AllBio workshop - Â¡Â°Web services for improved interoperability in bioinformaticsÂ¡Â± (Oct 2-5 2012, Munich, DE)
Code of Conduct¶
We respectfully ask all attendees at meetings to conduct themselves in a way that maintains focus, respect, order - and enjoyment! Suggestions include:
- Bear in mind that you are as responsible for the success of the meeting as anyone else.
- Stick to the meeting agenda if stipulated (most of our meetings do not have rigid agendas).
- Remain focused on the task at hand.
- Come prepared.
- Use an analytic, facts-based approach to problem solving whenever possible.
- Manage meeting time wisely.
- Brainstorm when fresh ideas are in short supply or complex problems present challenges.
- Allow for the expression of every personÂ¡Â¯s ideas, and give all ideas a serious hearing.
- Listen carefully to each other, and be courteous.
- Accommodate disagreements and criticisms without hostility.
- Refrain from all personal attacks.
- Demonstrate flexibility.
- Make meetings enjoyable; employ humour and respect.
- Resolve conflict through compromise and consensus whenever possible.